toolbox
The miR-CRISPR tool is an integrated algorithm designed to facilitate CRISPR / Cas9 genome engineering of putative microRNA response elements (MREs).
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toolbox
The iSBHFold tool is a web interface designed to let its user design protein and ASO-responsive CRISPR single guide RNAs for their particular gene targets.
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EXTERNAL LINKS

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The MIT CRISPR design tool is a web tool crafted to simplify the process of CRISPR guide selection in an input DNA sequence.
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The CRISPR Finder will show CRISPR sites (paired or single) in and around genes. It also provides the ability to find CRISPRs in genomic sequence or by gRNA.
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CHOPCHOP is a web tool for selecting the optimum target sites for CRISPR/Cas9- or TALEN-directed mutagenesis.
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Improved vectors and genome-wide libraries for CRISPR screening.
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A simple and versatile tool for rapid manipulation of nucleic acid sequences.
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Basespace is Illumina's next-generation sequencing cloud computing environment designed with biologists in mind.
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The RNAfold web server will predict secondary structures of single stranded RNA or DNA sequences.
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The Nucleic Acid Package, is a growing software suite for the analysis and design of nucleic acid systems.
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miRBase is a biological database that acts as an archive of microRNA sequences and annotations.
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TargetScan predicts biological targets of miRNAs by searching for the presence of conserved 8mer and 7mer sites that match the seed region of each miRNA.
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This tool allows you to run the PITA algorithm on your choice of UTRs and microRNAs.
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toolbox
Predicted microRNA targets & target downregulation scores. Experimentally observed expression patterns.
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